K.D.
I haven't encountered this, however I have a suggestion for you how it may have happened -- one that will let you breathe a little easier. Grocery man, putting bottles/boxes of water on the shelf, slicing open the bigger cardboard boxes they come in grazes that bottle with the tip of his box cutter. Not enough to put a hole the water would leak out of, but enough to weaken that spot until you get it out to drink it, squish the bottle a little as you are holding it, and viola! a pin hole.
Get a quality water bottle and drink filtered water. That's what I do, minus the filter. I would filter ours, but it comes directly from a mountain spring.